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BIO-Informatics Product Owner

Apolis
  • San Diego, CA
  • Remote
  • $40–$42 Per Hour
  • Instant Apply
10 days ago

Job Description

Job Title:Bioinformatics Pipeline Engineer 
Domanin (Healthcare Domain)
Location Remote 
Location 2+ Years of exp 
  
Hire Type (FTE/Contract):6 Months
Job DescriptiOverview
As a Bioinformatics Engineer, you will work for the world leader in the industry, with a career where you will have the opportunity to collaborate and affect change while expanding your leadership skills and technical knowledge. You can make a real impact in a market that is growing and developing.
This position is in our Bioinformatics Solutions Engineering group, part of the Research and Development organization, in Molecular Genomics & Oncology unit. The team supports genetic/genomic testing in a highly regulated CAP/CLIA laboratory environment primarily using short and long-read sequencing as the basis of evidence. The right candidate will know how to balance innovation, standards, and quality with a practical understanding of when each is appropriate. The Bioinformatics Solutions Engineering group is a cross-functional unit focusing on end-to-end design, develop, document, validation and launching of new high quality diagnostic tests and services for the benefit our patients.
This person can work 100% remote and must be located in the US.
 
Responsibilities
Develop, validate, and implement new software applications, databases, processes, and interfaces relating to next-generation sequencing (NGS) data analysis, advanced diagnostic testing development and validation, data quality review, and clinical reporting.
Serve as SME on specific systems/workflows supporting advanced development and high-tier production support.
Participate in resolution of support requests. Regularly report progress and prepare data analyses for internal review
Prepare reports and other communications of technical activities related to business objectives such as product/process development and improvement.
Activities may be focused individual projects or, more usually, assignments as a member of a project team, often working closely with other Software Developers, R&D bench scientists, Genetic Counselors, Operations Scientists, and other technical business partners.
 
Qualifications
3+ years of experience with a Bachelor's degree or 1+ year with a Master's degree and experience in an industrial or academic setting working with clinical and biological data or equivalent and underlying technologies including bioinformatic methods, database development, query/scripting/programming languages, cloud development, agile methodology, DevOps and other data analysis tools.
 
Preferred Work Experience / Skills:
  • Bioinformatics tools such as Dragen, bwa, VEP, FastQC, MultiQC, samtools, bedtools
  • Experience with sequencing data analysis, bioinformatics, variant data analysis
  • Pipeline workflow management languages: Nextflow (preferred), Cromwell, CWL, etc.
  • Cloud Computing: AWS
  • Infrastructure management: Terraform, AWS CDK
  • Programming Languages: Advanced level with interpreted/scripting languages such as Python, JavaScript/typescript, R, etc.
  • Containerizing: Docker
  • Experience with designing and working with application programming interfaces (e.g. JSON based RESTful APIs)
  • Web Frameworks: Python Flask, React Native, Bootstrap
  • Reporting: Familiarity with R Markdown, Jupyter Notebook
  • Visualization: Experience with any of ggplot2/tidyverse, Plotly, matplot lib, Tableau, d3.js
  • Source Control: Git
  • CI/CD: GitHub CI/CD
  • Familiarity with AI developer tools like GitHub Copilot
  • Understanding of environment management
  • Experience of working in clinical diagnostics setting (regulations, controlled processes, environment management) is a plus.
 
 

Numbers & Facts

LocationSan Diego, CA (
Remote
)
IndustryComputer/IT Services
Salary$40–$42 Per Hour
Company Size500 to 999 employees
Websitehttps://www.apolisrises.com/

Benefits

Paid Sick Days, Employee Referral Program, Employee Events, Retirement / Pension Plans

About Company

Since 1996, RJT has provided successful SAP, Oracle, and IT consulting solutions and staffing services to clients around the world. The new Apolis brings you the same personalized service fortified with a greater array of IT solutions, global expertise, and cost-management strategies.

We are a global IT consultancy that seamlessly integrates experts and leading-edge solutions into your organization so you can focus on what really matters.

Skills

  • Agile Programming Methodologiesunmatched
  • Amazon Web Services (AWS)unmatched
  • Application Programming Interface (API)unmatched
  • Artificial Intelligence (AI)unmatched
  • Bioinformaticsunmatched
  • Clinical Dataunmatched
  • Cloud Computingunmatched
  • Continuous Deployment/Deliveryunmatched
  • Continuous Integrationunmatched
  • Cross-Functionalunmatched
  • Data Analysisunmatched
  • Data Qualityunmatched
  • Database Programmingunmatched
  • DevOpsunmatched
  • Dockerunmatched
  • Environmental Managementunmatched
  • Geneticsunmatched
  • Genomicsunmatched
  • Gitunmatched
  • GitHubunmatched
  • Healthcareunmatched
  • Healthcare Qualityunmatched
  • Interpreted Programming Languagesunmatched
  • JSONunmatched
  • JavaScriptunmatched
  • Leadershipunmatched
  • Next Generation Sequencing (NGS)unmatched
  • Oncologyunmatched
  • Process Developmentunmatched
  • Process Improvementunmatched
  • Process Managementunmatched
  • Production Supportunmatched
  • Programming Languagesunmatched
  • Programming Toolsunmatched
  • Progress Reportsunmatched
  • Python Programming/Scripting Languageunmatched
  • R Programming Languageunmatched
  • REST (Representational State Transfer)unmatched
  • Regulationsunmatched
  • Reporting Skillsunmatched
  • Research & Development (R&D)unmatched
  • Sales Pipelineunmatched
  • Scripting (Scripting Languages)unmatched
  • Software Developmentunmatched
  • Source Code/Configuration Management (SCM)unmatched
  • Tableauunmatched
  • Test Plan/Scheduleunmatched
  • Validation Documentationunmatched
  • Validation Testingunmatched

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