44 Results for

Bioinformatics Jobs in Allston, MA

Jobs

Boston, MA30+ days ago

Extensive knowledge of the use of bioinformatics computations in high-performance computing environments and web development, including open-source bioinformatics software and pipelines to support diverse bioinformatics analyses such as single-cell RNA-seq, bulk RNA-seq, proteomics, etc. Ability to effectively convey messages through written communication that are tailored to target audience; meeting discussions and one-on-one verbal communications are clear and effective; ability to conduct effective meetings, to present in departmental and hospital forums, and to develop training instructions and manuals.

Boston, MA9 days ago

$170,000–$190,000 Per Year

Every team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills.

Boston, Massachusetts30+ days ago

Employee

Lexington, MA30+ days ago

$145,200–$170,000 Per Year

The final salary offered to a selected candidate will depend on various factors, including—but not limited to—the scope and responsibilities of the role, the candidate’s experience, skills and education/training, internal equity considerations and applicable legal requirements. The Counter-WMD Systems Group at MIT Lincoln Laboratory is seeking a highly motivated and multidisciplinary biologist to support research and development efforts focused on national security challenges.

Lexington, MA17 days ago

$100,200–$120,000 Per Year

Lexington, MA17 days ago

$116,400–$140,000 Per Year

Required Qualifications: Master’s degree (or Bachelor’s degree plus three years of work experience) in Bioengineering, Computational Biology, Bioinformatics, Molecular Biology, Data Science or a related field, or a Computer Science degree with extensive biology experience. The final salary offered to a selected candidate will depend on various factors, including—but not limited to—the scope and responsibilities of the role, the candidate’s experience, skills and education/training, internal equity considerations and applicable legal requirements.

Cambridge, MA30+ days ago

$135,100–$225,100 Per Year

Pfizer's cross-functional 'omics ecosystem team is actively seeking a highly motivated, creative, and enthusiastic computational biology researcher with a strong background in data handling, integration and analysis, exceptional full-stack software engineering skills, and a sound understanding of drug discovery and biology. Subject to further legal review and statutory or regulatory clarification, which Pfizer intends to pursue, reimbursement of recruiting expenses for licensed physicians may constitute a reportable transfer of value under the federal transparency law commonly known as the Sunshine Act.

Cambridge, MA30+ days ago

$166,800–$202,100 Per Year

Analyze multi-dimensional biomarker data generated from human subjects in clinical trials and other observational cohorts, including RNA-Seq, Exome and Whole Genome Sequencing, high throughput proteomics, and imaging data to validate pharmacodynamics effects, confirm the mechanism of action, and enable patient enrichment strategies. Work-life programs include paid national holidays and optional holidays, Global Shutdown days between Christmas and New Year's holiday, up to 120 hours of paid vacation, up to two (2) paid days to volunteer, sick time off, and summer hours flexibility.

Cambridge, MA30+ days ago

$211,950–$256,800 Per Year

IPS conducts applied computational research in areas that include genomic, structural and molecular informatics, computational and systems biology, patient selection and translational biomarker research, and broader fields including knowledge science, epidemiology and machine learning-across the full lifecycle of drug discovery and development and across all therapeutic areas at BMS. Work-life programs include paid national holidays and optional holidays, Global Shutdown days between Christmas and New Year's holiday, up to 120 hours of paid vacation, up to two (2) paid days to volunteer, sick time off, and summer hours flexibility.

Cambridge, MA30+ days ago

$175,000–$220,000 Per Year

Strategic thinker, planner and implementer of computational biomarker and translational analyses for early‑phase oncology studies (e.g., FOG‑001 and ERG/AR degraders), from IND‑enabling work through Phase 1/2, ensuring continuity between preclinical and clinical datasets. Design and execute analysis plans for diverse biomarker modalities across preclinical models and clinical samples, including bulk and single‑cell RNA‑seq, DNA panels/WES, ctDNA, IHC/IF, multiplex protein assays, and other exploratory readouts.

Cambridge, MA12 days ago

Familiarity with NGS data types, including pooled gene perturbation screens, bulk RNA-seq, amplicon-seq, Perturb-seq, or related workflows. Process pooled genomic perturbation screen data, including raw FASTQ files, utilizing established NextFlow pipelines and internal gene-edited reporting systems.

Boston, MA30+ days ago

We are seeking a Statistical Geneticist with expertise in whole genome sequencing (WGS), proteomics, and clinical outcomes analysis to advance our research in identifying novel therapeutic targets. The Cardiometabolic Research (CMR) Therapeutic Area of our client, focuses on the discovery of biologic, small molecule and genetic therapeutics for the treatment of cardiometabolic diseases and associated complications.

Cambridge, MA30+ days ago

$145,000–$175,000 Per Year

Provide scientific leadership and data science / (chem)informatics expertise towards, but not limited to, hit identification, targeted screening of Helical peptide library designs, hit prioritization, hit-to-lead progression using multi-objective optimization, new drug-target assessments, and advancing drug-pipeline projects towards the clinic. Reporting to the Associate Director of Cheminformatics, the candidate will work collaboratively with biologists and chemists, leveraging skills in data science and cheminformatics to enable hypothesis generation and data insights for advancing Fog preclinical drug discovery.

Cambridge, MA30+ days ago

$280,400–$467,400 Per Year

The Machine Learning Computational Sciences (MLCS) leader is responsible for the preclinical computational and machine learning strategy supporting preclinical R&D scientific stakeholders including computational biology, small and large molecule design, pharmaceutical sciences and drug safety. Process Management – Good at figuring out work processes necessary to get things done; knows how to organize people and activities; understands how to separate and combine tasks into efficient workflow; knows what to measure and how to measure it; can see opportunities for synergy and integration where others can't; can simplify complex processes; gets more out of fewer resources.

Milford, Massachusetts19 days ago

New!

Boston, MA3 days ago

Key ResponsibilitiesProducing innovative solutions driven by exploratory data analysis of complex and high-dimensional datasets; applying knowledge of statistics, machine learning, programming, data modeling, and advanced mathematics to generate and test hypotheses and interpret the results of experiments. Presenting at project and internal meetings; effectively conveying progress and asserting point of view; constructively discussing issues and providing facts; building credibility and trust by asking thoughtful questions and actively listening; running productive project meetings that advance problem-solving.

Cambridge, MA30+ days ago

$160,060–$193,900 Per Year

Key responsibility of this role is to effectively collaborate with a cross functional team of asset scientists with deep disease, drug development and business knowledge to help drive an overall translational strategy, working closely with discovery and early development teams, late clinical development as well as with our team of laboratory scientists. + Leads small and large collaborations with academia and industry partners to identify biobanks, clinical trials and existing databases to collate multi-parameter genomic, immune and clinical datasets to mine for novel biomarkers of unmet need patients in conjunction with computational biologists, data scientists and statisticians.

Cambridge Crossing, MA30+ days ago

$166,770–$202,086 Per Year

Hands on experience analyzing and integrating high-dimensional molecular datasets such as multi-omics (RNA-seq, ATAC-seq, proteomics, ChIP-seq/CUT&RUN ), single cell (CITE-seq, scATAC-seq, perturb-seq) and spatial profiling (Visium, GeoMx, CosMX ). We seek a creative and passionate computational scientist to join the Neuroscience, Immunology, and Cardiovascular (NIC) discovery team within Informatics and Predictive Sciences, a globally distributed group driving innovative computational research for discovery and early development.

New!

Cambridge, MAToday

Essential qualifications include a PhD in a quantitative field, expertise in NGS data analysis, programming skills in Python and shell scripting, and experience with cloud services like AWS, containerization tools such as Docker, and workflow management languages. This postdoctoral fellowship offers the opportunity to develop independent research within biomedical informatics, focusing on large-scale genomic data analysis and pipeline development on cloud platforms.

Cambridge, MA30+ days ago

Full-time

The candidate will be responsible to work with internal and external teams to formulate scientific questions into coherent analytical efforts for causal analysis with a variety of goals including discovering new biology, identifying potential disease targets, developing prognostic and predictive biomarkers, defining target populations for clinical trials patient stratification and predicting patient outcomes to treatment. Gemini Digital Twins are being used today to discover novel therapies and accelerate R&D in Alsheimer’s Disease, Parkinson’s Disease, Huntington’s Disease, Multiple Myeloma, Prostate Cancer and Pancreatic Cancer with several more in development.

Cambridge, MA30+ days ago

$180,000–$220,000 Per Year

Leads small and large collaborations with academia and industry partners to identify biobanks, clinical trials and existing databases to collate multi-parameter genomic, immune and clinical datasets to mine for novel biomarkers of unmet need patients in conjunction with computational biologists, data scientists and statisticians. Translational disease strategies in Alzheimer's /Neurological Diseases are derived from long term investments in developing data and deep expertise in disease biology, neuroinflammation and patient segments to assist science driven strategies for the development of the neuroscience pipeline.

Lexington, MA30+ days ago

$116,400–$140,000 Per Year

The Group’s efforts include developing software architectures and systems, bioinformatics tools, and AI algorithms to further the nation’s efforts in biomedical, health, chemical and biological defense, biosecurity, public and global health and warfighter performance. The position will involve leading the development of AI/ML models, data curation, planning and conducting field data collections, leading small programs, collaborating with other scientists and engineers, and communicating results both in written and oral form.

Waltham, MA25 days ago

We are looking for an experienced researcher to join our team as Principal Research Associate/Associate Scientist in the Molecular Assembly team, supporting our novel target identification and validation workflow in house. Excellent written and verbal communication skills, with the ability to document experiments in an organized and timely fashion and to present scientific data to coworkers.

Boston, MA30+ days ago

Strong understanding of key concepts, including potential energy surfaces (PES), intermolecular and intramolecular forces/interactions, force fields, molecular properties, thermodynamic properties, solvation models (implicit/explicit), and conformational sampling . We are the only AI-native biotech, pioneering small and large molecule therapeutics discovery by integrating massive multimodal data, frontier AI models, and high-throughput lab automation into an infrastructure for AI-enabled drug discovery.

Boston, MA30+ days ago

New!

Cambridge, MAToday

$67,600–$91,826 Per Year

Key skills include expertise in machine learning (especially reinforcement learning and LLM fine-tuning), multi-agent systems, computational biology, and proficiency in Python and frameworks like PyTorch or JAX. The role involves designing and evaluating autonomous AI agents that integrate neuroscience and bioinformatics principles to advance understanding of complex biological systems.

BEDFORD, MA8 days ago

Full-time

PharmaEssentia Innovation Research Center (PIRC) is expanding its drug discovery organization in the Greater Boston area and is seeking an experienced and highly motivated Senior or Principal Scientist with expertise in immunology, immuno-oncology, and translational pharmacology. Cross-Functional CollaborationWork effectively within multidisciplinary teams spanning biologics discovery, translational science, bioinformatics/data science, and external CRO collaborators.

New!

Boston, Massachusetts3 days ago

$65–$72 Per Hour

Agreeing to the Atrium Terms and Conditions, includes permission to use the email address and mobile phone number you provide during the application process or throughout the duration of your prospective or actual employment to notify you of job openings, profiles, articles, news, and other employment-related information, as well as to notify you of special promotions or additional products and services offered by us or our affiliates and partners. Conduct proteomics experiments on different cell types (intracellular and cell surface) including but not limited to stem cells, differentiated cells, different cellular compartments, and understand post translational modification profiling at proteome level through different sample preparation and mass spectrometry fragmentation techniques.

Lexington, MA30+ days ago

$28–$32 Per Hour

With a focus on developing differentiated product candidates that are designed to alter TGF- signaling, we aim to target the pathways critical for the growth, repair and maintenance of blood cells and a number of tissues, including bone, skeletal muscle, adipose and heart tissue. Support protein production efforts, including expression in mammalian systems, purification to achieve high quality reagents using FPLC, affinity, ion-exchange, and SEC chromatography, and continuous optimization of production methods for novel biomolecules.

Boston, MA30+ days ago

Cambridge, MA30+ days ago

Full-time

Partner with Clinical Development, Global Regulatory Affairs, Data Science, Patient Reported Outcomes, Statistics and other core functions in Precision Measures (including Biomarkers & Imaging) to contribute to holistic measurement plans (across molecular, imaging, digital, clinical and other measures) for our compounds in development. Develop relationships with key scientists and clinicians externally and with internal stakeholders to map target mechanisms to human genetics and brain biology with a view towards different indications or patient populations and develop forward looking data strategies along the path to launch.

Boston, MA10 days ago

Required Skills: • Proficient use of AI-assisted development tools (e.g., Claude, Copilot) to accelerate coding, with the judgment to review, test, debug, and maintain AI-generated code responsibly• Working proficiency in Python (or similar languages) and SQL; familiarity with JavaScript, HTML, and CSS for building dashboards and web interfaces. Designs, develops, deploys, and maintains software applications, dashboards, and data tools that enable investigators to collect, manage, analyze, and visualize clinical research data.

Waltham, MA25 days ago

$145,000–$170,000 Per Year

Nova Biomedical is proud to be a global leader in osmolality testing and biotechnology and in vitro diagnostic (IVD) instrumentation, dedicated to advancing patient care and scientific discovery with a legacy that continues to shape the future of life sciences. With headquarters in Norwood and Waltham, Massachusetts, and a global team of nearly 2,000 employees, we’re building a collaborative, empowered culture grounded in shared values: Customer Centricity, Ingenuity, Ownership & Accountability, Collaboration, and Integrity.

Boston, Massachusetts30+ days ago

Partner with investigators and core unit staff with the following responsibilities: development and implementation of data collection and management plans and ensure plans are followed according to study design and requirements; Collaborate with Researchers to create databases and offer guidance on data management tools, programs, data collection; perform quality control checks and data cleaning; provide oversight with database close-out activities, archiving of study databases and related documents, data release and data sharing in accordance with federal regulations. Data management services include partnering with investigators and the HNRCA bioinformatician, statisticians and analysts to develop, refine, and implement data collection and management plans; provide guidance for data collection, quality control and data cleaning; and contribute to development of plans for data close-out and codebooks, data sharing, and data retention.

Boston, MA30+ days ago

D. in molecular biology, immunology, biochemistry, bioinformatics, bioengineering, organic chemistry, medicinal chemistry, cancer biology, pharmacology, biophysics, or a related field of study. Our sole focus on intellectual property enables us to more deeply understand our clients' technical needs, and our candidates' individual talents and career interests.

Boston, MA30+ days ago

As an AI Research Scientist III at 1910 you will be expected to roll up your sleeves as an Individual Contributor (IC) by keeping up with relevant scientific literature, prototyping promising methods, and contributing to our active drug design campaigns by applying 1910's productionized AI/ML models. We are the only AI-native biotech, pioneering small and large molecule therapeutics discovery by integrating massive multimodal data, frontier AI models, and high-throughput lab automation into an infrastructure for AI-enabled drug discovery.

Boston, MA30+ days ago

As an AI Research Scientist I at 1910 you will be expected to roll up your sleeves as an Individual Contributor (IC) by keeping up with relevant scientific literature, prototyping promising methods, and contributing to our active drug design campaigns by applying 1910's productionized AI/ML models. We are the only AI-native biotech, pioneering small and large molecule therapeutics discovery by integrating massive multimodal data, frontier AI models, and high-throughput lab automation into an infrastructure for AI-enabled drug discovery.

Boston, MA30+ days ago

As an AI Research Scientist II at 1910 you will be expected to roll up your sleeves as an Individual Contributor (IC) by keeping up with relevant scientific literature, prototyping promising methods, and contributing to our active drug design campaigns by applying 1910's productionized AI/ML models. We are the only AI-native biotech, pioneering small and large molecule therapeutics discovery by integrating massive multimodal data, frontier AI models, and high-throughput lab automation into an infrastructure for AI-enabled drug discovery.

Cambridge, MA8 days ago

Full-time

The DECODE platform has been validated through four strategic partnerships with leading pharmaceutical companies—Bristol Myers Squibb, Genentech, Eli Lilly, and Pfizer—representing over $4.5 billion in disclosed total deal value and $185 million in upfront payments received to date. Experience with structural modeling tools and frameworks, including protein structure prediction (AlphaFold2/3, RoseTTAFold, ESMFold), structure-based design (ProteinMPNN, RFdiffusion), and/or graph neural networks operating on 3D protein coordinates (e.g.

New!

Boston, MAToday

Responsibilities include developing and applying code to process and analyze mycobacterial molecular and phenotype data, creating production-ready tools for dissemination and diagnostic use, and managing large-scale datasets. Seeking a highly motivated 'dry lab' Postdoctoral Fellow in Biomedical Informatics to conduct innovative research in infectious disease genomics, focusing on M.

Cambridge, MA30+ days ago

$220,000–$280,000 Per Year

The successful candidate will have prior therapeutic area and late development clinical experience in biotech/pharma organizations interacting with project teams, clinical research physicians, statisticians, computational biologists, contract research organizations and translational scientists to deliver science that supports the development of medicines to patients in need. This individual will assume translational lead responsibilities for assets such as serving as a TM representative on global program teams, biomarker representative on study teams, setting up biomarker plans for individual trials and ensuring appropriate collection and timely analysis and reporting of final biomarker data.

New!

Boston, MAToday

$72,000–$76,000 Per Year

The role involves developing an independent research project, applying for funding, contributing to grant and manuscript writing, mentoring lab members, and supporting lab operations. A postdoctoral fellow position is available in the Silver lab at Harvard Medical School, focusing on engineering biological systems for health and sustainability.

Boston, MA30+ days ago

The Abudayyeh-Gootenberg lab (abugootlab.org) at Beth Israel Deaconess Medical Center, Brigham and Women’s Hospital, and Harvard Medical School is looking for a talented computational biologist to join our biotechnology and molecular engineering group as a postdoc. Doctoral Degree or M.D. 0-1 year of postdoctoral research experience in academic or industrial lab setting, and/or teaching assistantship in a university setting, and/or residency, and/or clinical duties beyond that of the qualifying doctoral degree.

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Bioinformatics Jobs in Allston, MA

Senior Bioinformatics Scientist Boston Children's Hospital

Bioinformatics Scientist Vivo HealthStaff

Decision Analytics Associate Consultant - Bioinformatics ZS

Tech Staff - Computational Biologist MIT Lincoln Laboratory

Assistant Staff - Computational Biologist MIT Lincoln Laboratory

Associate Staff - Computational Biologist MIT Lincoln Laboratory

Senior Principal Computational Biologist Pfizer

Principal Scientist, Translational Computational Biology - Neuroscience Bristol Myers Squibb

Associate Director of Computational Cancer Immunology Bristol Myers Squibb

Associate Director, Data Science, Computational Biology Parabilis Medicines

Scientist The Steely Group

Post Doctoral Scientist- Human Genomics and Translational Data Science Xenon7

Senior Data Scientist, Chemical / Peptide Sciences Parabilis Medicines

Head, Machine Learning and Computational Sciences Pfizer

Senior Chromatography Data Processing Engineer Waters Corporation

Genomic Scientist Boston Children's Hospital

Senior Principal Scientist/Associate Director, Translational Development, Lung Cancer Disease Lead Bristol Myers Squibb

Principal Scientist Computational Biology Bristol Myers Squibb

HMS - Postdoctoral Fellow in Biomedical Informatics (Park Lab) Harvard University

Research Scientist/ Senior Research Scientist, Precision Medicine Aitia

Associate Director, Translational Medicine , Late Stage Neuroscience Bristol Myers Squibb

Data Scientist MIT Lincoln Laboratory

Principal Research Associate/Associate Scientist, Molecular Assembly TScan Therapeutics

Computational Theoretical Chemist III 1910

Computational Theoretical Chemist II 1910

Postdoctoral Fellow in Agentic AI for Science Harvard University

Senior / Principal Scientist, Immunology & Pharmacology PharmaEssentia U.S.A.

Analytical Development Scientist - Proteomics (Contract) Vertex Pharmaceuticals

Research Associate Co-Op, Protein Biochemistry/Engineering Keros Therapeutics

Computational Theoretical Chemist I 1910

Director, Computational Multiomics, Neuroscience Johnson and Johnson

Research Assistant I Boston Children's Hospital

Senior AI Engineer Nova Biomedical

Data Management Specialist Tufts University

Patent Agent (Life Sciences) #21642 Boston Vanguard-IP

AI Research Scientist III 1910

AI Research Scientist I 1910

AI Research Scientist II 1910

Applied Machine Learning/AI Scientist Repertoire Immune Medicines

HMS - Postdoctoral Fellow in Biomedical Informatics (Farhat Lab) Harvard University

Director, Clinical Biomarker, Late Stage Neurology (Translational Medicine) Bristol Myers Squibb

Postdoctoral Fellow in Systems Biology Harvard University

Postdocoral Fellow Beth Israel Lahey Health

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