43 Results for

Bioinformatics Jobs in San Francisco, CA

Jobs

South San Francisco, CA16 days ago

$45–$65 Per Hour
Full-time
Employee

Within this group, the Digital Pathology team focuses on revolutionizing the analysis of digital histopathology slides by leveraging computational methods to enhance pathological evaluations traditionally performed solely by humans. The role requires close collaboration with pathologists to design and execute image analysis workflows tailored to biological questions, as well as working with computational and data scientists across various departments.

South San Francisco, CA13 days ago

$130,000–$173,000

It has raised $57 million led by Alpha Wave Ventures, and joined by other leading life sciences investors ARCH Venture Partners, Future Ventures, GV, Khosla Ventures and YK Bioventures. Moonwalk’s discovery platform has resulted in novel adipose targets from deep genetic and epigenetic associations, advanced AI prediction tools, and profiling of primary human samples.

South San Francisco, CA30+ days ago

In this role, you will work at the intersection of computational and molecular biology, developing advanced DNA sequence analysis pipelines, gene design algorithms, and predictive models to optimize DNA synthesis and assembly. You will collaborate with molecular biologists, product teams, and manufacturing engineers to refine client’s core synthetic biology platform, troubleshoot assembly challenges, and improve DNA synthesis efficiency.

New!

Foster City, CA2 days ago

$75–$80 Per Hour

By applying to our jobs you agree to receive calls, AI-generated calls, text messages, or emails from Pyramid Consulting, Inc. and its affiliates, and contracted partners. Design assembly strategies for non-model organisms, including genome profiling, contamination screening, sequencing coverage assessment, and data quality evaluation.

SF, CA20 days ago

$170,000–$190,000 Per Year

Every team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills.

New!

Foster City, CA3 days ago

This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

New!

Foster City, CA3 days ago

$80.50–$80.50 Per Hour

This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. "Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

New!

Foster City, CA3 days ago

$70–$80.49 Per Hour

Summary: Bioinformatics Engineer — T2T Genome Assembly (Non model Organisms) This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non-model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. With 850+ global consultants, VARITE is committed to delivering excellence to its customers by leveraging its global experience and expertise in providing comprehensive scientific, engineering, technical, and non-technical staff augmentation and talent acquisition services.

New!

Foster City, CA2 days ago

$70–$80 Per Hour
Temporary

DescriptionBioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

New!

Foster City, CA2 days ago

$70–$78

Work Type: OnsiteBioinformatics Engineer - T2T Genome Assembly (Non model Organisms)This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

South San Francisco, CA30+ days ago

Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Womens Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Strong software engineering skills: Python, ML tooling (PyTorch Lightning, Hydra, Weights & Biases/MLflow), Git/GitHub, code review, testing & productionizing models with Docker/Kubernetes, APIs, and AWS services (e.g., S3, Batch/EKS, Lambda, Step Functions, SageMaker or equivalent).

New!

Foster City, CA2 days ago

$75.50–$80.50 Per Hour

Responsibilities:Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

New!

Foster City, CA3 days ago

$75.50–$80.50 Per Hour

New!

Foster City, CA3 days ago

$71.94–$80.50 Per Hour

This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. •Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.

South San Francisco, CA30+ days ago

$110,000–$120,000 Per Year

Spanning single-cell transcriptomics, genetics, proteomics, spatial transcriptomics, and functional genomics, the postdoctoral fellow will lead large-scale integrative analyses to delineate the complex and overlooked role that stromal cells might play in disease pathogenesis. A position is available for a postdoctoral fellow to join the Computational Sciences - Center of Excellence (CS-CoE) organization, which uses data, by developing best-in-class computational methods, and applying them to the most relevant scientific problems across all stages of the pipeline.

South San Francisco, CA8 days ago

$50–$62 Per Hour

The role combines computer vision, machine learning, deep learning, and image-processing expertise to improve pathology data analysis and support biologically meaningful interpretation of complex image datasets. Partner with computational scientists, data scientists, and cross-functional research teams to continuously improve digital pathology workflows and analytical approaches.

Novato, CA30+ days ago

Full-time

This individual will design and deploy causal inference pipelines, longitudinal and multiscale temporal models, and multimodal data integration approaches connecting omics, clinical phenotypes, and wearable-derived physiological signals. The Senior Computational Scientist will play a central role in a large funded research project focused on identifying causal drivers and mechanistic pathways underlying resilience, aging trajectories, and functional decline.

Novato, CA12 days ago

Full-time

The Furman Lab at the Buck Institute for Research on Aging invites applications for a Senior Scientist or Postdoctoral Researcher to join a newly initiated, five-year government-funded research program focused on understanding the mechanisms of aging and developing interventions to extend healthspan. In addition to their research role within the project, the successful candidate will serve as Co-Director of the Buck Institute’s Bioinformatics and Data Science Core, playing a central role in expanding the Core’s capacity, service offerings, and scientific impact across the Institute.

South San Francisco, CA30+ days ago

$135,000–$180,000 Per Year

You will lead the curation of RNA-focused datasets for ML training and validation, discover statistical patterns in our large-scale datasets evaluating RNA structure and RNA-small molecule interactions, and devise and implement new strategies to test the accuracy of our ML models. As a full-time Data Scientist on the Machine Learning team, you will work closely with scientists and engineers to apply and advance our technology platform for RNA structure prediction, target identification, and early-stage drug discovery.

New!

San Francisco, CA1 day ago

Using your blend ofcomputational expertise and in-depth biochemical understanding of proteins, you will generate insights to improve protein functionality and operate at the interface between our machine learning and experimental platform units, working closely to seamlessly integrate AI generations and lab validation data. You have a proven track record of running protein design campaigns end-to-end, successfully leveraging novel computational tools and knowledge of biochemistry or structural biology to design proteins to functional requirements and applications in synthetic biology.

New!

San Francisco, CA1 day ago

We are a group of mission-driven software engineers from Palantir and applied biological ML engineers from MIT's Broad Institute and DeepMind making the latest advances in computational biology accessible in the real-world for federal and commercial use. We are seeking a highly skilled, data-centric AI Engineer to develop and apply state-of-the-art ML methods for assessing and responding to biological threats and for rapidly designing precision biologics.

South San Francisco, CA30+ days ago

$135,000–$170,000

About Us Deep Apple Therapeutics, part of the Apple Tree Partners (ATP) portfolio, is a Bay Area biotechnology company focused on accelerating drug discovery by integrating molecular docking and structural biology with advanced computer-aided drug design (CADD) technologies. Our state-of-the-art platform combines advanced computational modeling, large-scale compound docking, cryo-EM-based structural biology, and deep learning to drive the efficient identification and development of novel therapeutics.

New!

Emeryville, CA1 day ago

$147,000–$177,000 Per Year

Hands-on experience developing, optimizing, or applying NGS-based workflows for genome editing analysis, such as CHANGE-seq, CHANGE-seq-BE, GUIDE-seq, SITE-seq, CIRCLE-seq, Digenome-seq, DISCOVER-seq, INDUCE-seq, targeted amplicon sequencing, rhAmpSeq/AmpSeq-like workflows, hybrid capture, RNA-seq, WGS, or related approaches. Deep expertise and hands-on experience with CRISPR-based genome editing systems, particularly base editors, and a strong understanding of modality-specific specificity risks such as DNA off-target editing, RNA off-target editing, bystander editing, indels, and unintended editing outcomes.

New!

San Francisco, CA1 day ago

Output Biosciences is currently in stealth, operated by a team of repeat founders and biotech veterans with multiple exits in AI and biology, and backed by top VCs including Y Combinator. Healthy feedback focused environment to help you strive - leadership will have high expectations, regularly share constructive feedback, support you and help you grow, and welcome receiving feedback and ideas from you .

New!

Berkeley, CA1 day ago

$135,300–$178,350 Per Year

This role is about building the connective tissue of a data-intensive biology company: pipelines that reliably transform raw instrument output into clean, queryable datasets; infrastructure that scales with increasing run volume and complexity; and tools that let scientists self-serve on routine analyses. Deploy and maintain data visualization tools (dashboards, interactive browsers) that allow scientists to independently explore sequencing metrics: yields, classification accuracy, plate-level comparisons, signal quality trends.

Palo Alto, CA30+ days ago

$163,700–$225,100 Per Year

Essential Duties and Responsibilities: Continue to build and manage a global patent portfolio, including preparing and prosecuting patent applications, identifying strategic areas for patenting, harvesting patentable inventions, and evaluating the patentability of invention submissions Collaborate with other members of the IP Team to develop and advise on global patent and IP strategy Oversee and coordinate with outside counsel as necessary with respect to IP protection Perform infringement and validity analyses and evaluate risk mitigation strategies Develop relationships with counsel, educate scientists and other employees on patent-related matters Partner with relevant stakeholders across the company to provide strategic IP counseling with respect to research and product development Support litigation and other dispute efforts concerning IP Assist with licensing, M&A, and other commercial transactions as needed. Primary Location: Palo Alto, CA Primary Location Base Pay Range: $163,700 - $225,100 Other US Location(s) Base Pay Range: $139,145 - $191,335 If the role is performed in Colorado, the pay range for this job is: $147,330 - $202,590 Employee may be required to lift routine office supplies and use office equipment.

Novato, CA30+ days ago

Full-time

This individual will help develop new computational methods, analyze complex imaging datasets, and work closely with experimental and computational researchers to generate insights from large-scale biological data. Prior experience in biological or biomedical imaging is helpful but not required for candidates with strong technical expertise and a genuine interest in applying frontier AI methods to major biological questions.

New!

South San Francisco, CA1 day ago

$40–$50 Per Hour

Dive into clinical and transcriptomics/genomics data from both mouse studies and clinical trial patients to investigate tumor biology, accelerating translational research with the potential to discover novel biomarkers predictive of response and/or resistance to treatment. Their focus will be on investigating drug mechanisms of action and resistance in colon cancer through the analysis and interpretation of mouse and human genomic data from implanted tumors in mice and matched primary and metastatic tumors from humans.

South San Francisco, CA7 days ago

$61–$64

South San Francisco, CA8 days ago

$45–$65 Per Hour

New!

South San Francisco, CAToday

$39.47–$67.20 Per Hour

Novato, CA30+ days ago

Full-time

The Ellerby and Gerencser labs at the Buck Institute seek a Postdoctoral Researcher (PhD required) with expertise in microscopy-based image processing, machine vision, and data operations supporting high-throughput small molecule screening. As a leading independent non-profit research institute in Marin County, CA, the Buck brings together experts across multiple disciplines to prevent or delay age-related diseases, including Alzheimer’s, Parkinson’s, cancer, cardiovascular disease, and diabetes.

South San Francisco, CA8 days ago

$39.47–$67.20 Per Hour

San Carlos, CA30+ days ago

$120,000–$150,000

PhD in molecular biology, genomics, bioengineering, or related field, OR equivalent industry experience defined as 8+ years in NGS assay development with at least one shipped IVD, LDT, or commercially deployed assay. By creating a fully automated platform that brings together DNA sequencing, robotics, and cloud-based analytics, Clear Labs democratizes genomics applications to deliver better clarity.

New!

South San Francisco, CA1 day ago

Overview: The Biologics CMC Development organization at AbbVie has a long and rich history of biologics development, leveraging comprehensive end-to-end CMC capabilities to advance complex biologic therapies, such as bi-specifics and novel modalities, from discovery through human clinical studies and eventual licensure. Apply a rigorous theoretical and practical understanding of recombinant protein expression from the genome to the protein - including genomic loci, epigenetics, transcription, mRNA stability, translation, the organelles and secretory machinery involved, and the engineering constraints specific to industrial CHO cell line development.

Stanford, CA30+ days ago

$76,383–$80,000 Per Year

Job fields: Display Job fields For Employee Users: For Employee Users For Non Employee Users: For Non Employee Users Additional Information Schedule: Full-time Job Code: 5574 Employee Status: Fixed-Term Grade: R99 Requisition ID: 108336 Work Arrangement: On Site. The pay offered to a selected candidate will be determined based on factors such as but not limited to the scope and responsibilities of the position, the qualifications of the selected candidate, departmental budget availability, internal equity, geographic location, and external market pay for comparable jobs.

South San Francisco, CA30+ days ago

Responsibilities: Collaborate with scientists in Human Genetics department to analyze large datasets of genetic, genomic, and clinical data from internal studies (including our clinical trials and high throughput screens), collaborations with academic and industry partners, and public external data sets . Role Overview: The Human Genetics department at the client site is seeking a highly independent computational scientist with a strong hands-on analytical background in genetic epidemiology, statistical genetics, or computational biology, to develop and apply analytical approaches to integrate and interpret genetic, genomic, and clinical data.

New!

Sunnyvale, CA1 day ago

Throughout the strategy, design, and development lifecycle, you will work collaboratively with your design team, alongside engineers, product managers, and scientists, building future-forward experiences that leverage agentic AI capabilities to accelerate drug discovery, improve patient outcomes, and transform healthcare delivery. Your role is to identify opportunities across experiences and resolve gaps in our product strategy, building inter-operational product experiences that solve for those opportunities while ensuring AI-assisted experiences remain transparent, trustworthy, and grounded in real human needs.

New!

San Francisco, California5 days ago

Remote

$80–$150 Per Hour

PhD in Biology, Chemistry, Biochemistry, Computational Biology, Translational Science, or related fields. For details about the interview process and platform information, please check: https://talent.docs.mercor.com/welcome.

New!

San Francisco, CA1 day ago

$64,480–$76,980 Per Year

The postdoctoral fellow will have access to large-scale experimental data and state-of-the-art computational infrastructure to accomplish their research goals and will work in highly collaborative environment with computational and experimental biologists, synergizing the strengths of both domains to advance discoveries in network inference algorithms and the mechanisms of gene regulation. The laboratory of Christina Theodoris, MD, PhD, is seeking a highly motivated postdoctoral fellow with background in deep learning or network inference to join her research program in the Gladstone Institute of Cardiovascular Disease and Gladstone Institute of Data Science and Biotechnology.

South San Francisco, CA30+ days ago

$160,000–$185,000 Per Year

Strong track record of embedding DevOps capabilities directly within R&D or scientific teams, supporting rapid iteration and experimental workflows, with demonstrated deep analytical skills applied to troubleshooting code and resolving infrastructure issues. We are seeking a Senior DevOps Engineer to join the Technology Department to serve as a key technical partner enabling cloud-based scientific computing and drug discovery efforts focused on G-protein-coupled receptors (GPCRs).

San Francisco, CA30+ days ago

By combining data, technology and expertise, Form's solutions accelerate timelines from discovery to clinic by providing drug developers with rapid in silico characterization and optimization of their therapeutics — enabling higher yields, better expression, enhanced safety and shorter, less-expensive development cycles. With cross-disciplinary expertise spanning software engineering, biology, bioinformatics, AI, data science and wet lab validation, the Form Bio team collaborates closely with customers on their most pressing and strategic challenges and opportunities.

New!

San Francisco, CA3 days ago

This individual will serve as a key scientific and operational leader inside the company, partnering closely with computational scientists, experimental scientists (own lab), platform teams, translational biology, external collaborators, and executive leadership to prioritize programs, guide strategic decisions, and accelerate pipeline execution. This is a critical executive leadership role for a hands-on scientific leader who has spent significant time navigating the realities of drug discovery and development — someone who understands not only what can work scientifically, but what actually translates into successful therapeutic programs.

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Bioinformatics Jobs in San Francisco, CA

Computational Pathology Scientist Talent Software Services

Scientist/Engineer, Machine Learning / Bioinformatics Moonwalk Biosciences, Inc.

Senior Bioinformatics Scientist CEDENT

Bioinformatics Engineer T2T Genome Assembly (Non-Model Organisms) Pyramid Consulting, Inc

Bioinformatics Scientist Vivo HealthStaff

Associate Scientist - Bioinformatics V Integrated Resources, Inc

Associate Scientist - Bioinformatics V LanceSoft Inc

Bioinformatics Engineer - Genome Assembly Varite, Inc

Associate Scientist - Bioinformatics Jobs in USA, CA, Foster City | Rose International Job Rose International

Bioinformatics Engineer TekWissen LLC

Director, Discovery Bioinformatics Oncology Eli Lilly and Co

Bioinformatics Engineer Iconma

Bioinformatics Engineer ICONMA, LLC

Bioinformatics Engineer Net2Source

Postdoctoral Fellow, Computational Biology & Medicine/Neuroscience Genentech Inc

Computational Pathology Scientist The Fountain Group LLC

Senior Computational Scientist – Furman Lab Buck Institute

Senior Scientist or Postdoctoral Researcher-Furman Lab Buck Institute

Data Scientist, RNA Biology Atomic AI Inc

Computational Protein Designer Latent Labs

Member of Technical Staff - Applied AI Engineer Valthos

Principal Scientist, Computational Chemistry Deep Apple Therapeutics

Scientist II - Sr. Scientist, CRISPR Specificity & Genomic Safety Profluent Inc

Research Intern, Machine Learning Output Biosciences

Data Infrastructure Engineer Glyphic Biotechnologies

Intellectual Property Counsel I Guardant Health Inc

Data Scientist / AI Scientist – AI for Aging Research – Zhou lab Buck Institute

2026 Fall Intern - Translational Medicine Oncology Genentech Inc

Computational Pathology Scientist IT Engagements

Computational Pathology Scientist Talent Software Services, Inc.

Computational Pathology Scientist Iconma

Postdoctoral Researcher - Age Rejuvenation Screening & Data Analysis Buck Institute

Computational Pathology Scientist ICONMA, LLC

Senior / Staff Scientist, Assay Automation Clear Labs

Senior Scientist I Cell Line Development AbbVie Inc

Research Scientist (1 Year Fixed Term) Stanford University

Computational Scientist: Human Genetics Compass Consulting

Sr. UX Designer, AWS Applied AI Solutions Amazon

Research Biologist Mercor

Computational Postdoctoral Scholar - Theodoris Lab Gladstone Institutes

Senior DevOps Engineer – Research Cloud & Scientific Computing (AWS)(Biotech industry experience required) Septerna

Form Bio Internship: Scientific Strategy & Operations Form Bio

VP/SVP of Drug Discovery Deep Origin

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