17 Results for

Bioinformatics Jobs in South San Francisco, CA

Jobs

South San Francisco, CA30+ days ago

In this role, you will work at the intersection of computational and molecular biology, developing advanced DNA sequence analysis pipelines, gene design algorithms, and predictive models to optimize DNA synthesis and assembly. You will collaborate with molecular biologists, product teams, and manufacturing engineers to refine client’s core synthetic biology platform, troubleshoot assembly challenges, and improve DNA synthesis efficiency.

Menlo Park, CA30+ days ago

$170,000–$230,000 Per Year

We combine clinical-grade whole genome sequencing, advanced AI methods for genome interpretation, and seamless digital tools for doctors and patients to order and access results. Work with Clinical Lab Operations to define analytical performance claims (LoD/LoQ, precision, specificity, interference/cross-reactivity, carryover) and verification/validation study designs.

South San Francisco, CA30+ days ago

$100,000–$144,000 Per Year

Expertise in Workflow Language: Strong knowledge of workflow languages such as WDL, Nextflow, and/or Snakemake for automating and managing computational workflows. · Extensive Experience in Data Analysis: Proven ability to analyze complex datasets and derive .

San Jose, CA30+ days ago

As a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.

South San Francisco, CA30+ days ago

Data Analysis: Perform advanced statistical and computational analyses of genomics data, including variant calling, differential gene expression, pathway analysis, genomic annotation, and . · Collaboration: Work collaboratively with wet-lab scientists to understand experimental designs, troubleshoot data quality issues, and interpret biological findings.

South San Francisco, CA30+ days ago

Remote

Operational Collaboration: Serve as the technical point of contact for data tasks, coordinating data transfers and status updates with global collaborators, including attending meetings with Africa-based teams (East Africa Time Zone). G., Nextflow, Snakemake) and direct experience working with human Whole Genome Sequencing (WGS) data on Oxford Nanopore (ONT), including basecalling, structural variants, or methylation.

South San Francisco, CA30+ days ago

$56,056–$91,072 Per Year

Relevant experience for dealing with large datasets: batch effect detection and . · Complement existing code to generate specific plots and subsequent analysis .

South San Francisco, CA30+ days ago

$105,289–$126,100 Per Year

image stitching, image registration, denoising, spot detection, read calling, cell segmentation, phenotypic feature extraction, as well as data preprocessing, transformation, statistical analysis, and visualization. · Provide regular office hours to support and engage package users within the company, offering personalized troubleshooting, guidance, and training to foster effective software .

South San Francisco, CA30+ days ago

$104,582–$168,133 Per Year

Extensive experience in data and bioinformatics infrastructure (including curation, databases and workflows), particularly for AI/ML projects . · Maintain excellent documentation, and data analysis practices to ensure reproducible data .

South San Francisco, CA30+ days ago

$135,000–$170,000

About Us Deep Apple Therapeutics, part of the Apple Tree Partners (ATP) portfolio, is a Bay Area biotechnology company focused on accelerating drug discovery by integrating molecular docking and structural biology with advanced computer-aided drug design (CADD) technologies. Our state-of-the-art platform combines advanced computational modeling, large-scale compound docking, cryo-EM-based structural biology, and deep learning to drive the efficient identification and development of novel therapeutics.

San Carlos, CA13 days ago

$120,000–$150,000

PhD in molecular biology, genomics, bioengineering, or related field, OR equivalent industry experience defined as 8+ years in NGS assay development with at least one shipped IVD, LDT, or commercially deployed assay. By creating a fully automated platform that brings together DNA sequencing, robotics, and cloud-based analytics, Clear Labs democratizes genomics applications to deliver better clarity.

South San Francisco, CA30+ days ago

Responsibilities: Collaborate with scientists in Human Genetics department to analyze large datasets of genetic, genomic, and clinical data from internal studies (including our clinical trials and high throughput screens), collaborations with academic and industry partners, and public external data sets . Role Overview: The Human Genetics department at the client site is seeking a highly independent computational scientist with a strong hands-on analytical background in genetic epidemiology, statistical genetics, or computational biology, to develop and apply analytical approaches to integrate and interpret genetic, genomic, and clinical data.

Palo Alto, CA30+ days ago

$110,000–$165,000

This position is ideal for PhD scientists who enjoy working hands-on with cutting-edge tools and building new applications on emerging platforms—someone who likes to tinker, thinks creatively, and can take an idea from concept through implementation, experimental validation, data analysis, and execution to the finish line. Hands-on experience with quantitative nucleic acid analysis workflows, including at minimum NGS sample preparation and library preparation methods; experience with dPCR and multiplex PCR assay design is highly preferred.

Santa Clara, CA30+ days ago

$125,500–$233,500 Per Year

You will serve as the team's primary subject matter expert on applied chemistry, partnering closely with Materials, Consumables and Fluidics Engineers to select, test, and qualify new materials for chemical compatibility and performance, and develop scalable methods to bond similar and dissimilar materials, ensuring the long-term integrity of consumable devices. From robust sample isolation and preparation tools to novel sequencing technology and advanced bioinformatics, we are developing differentiated, highly integrated end-to-end solutions for next-generation sequencing, resulting in a sample in, result out workflow.

Brisbane, CA30+ days ago

$220,000–$280,000 Per Year

The successful candidate will have prior therapeutic area and late development clinical experience in biotech/pharma organizations interacting with project teams, clinical research physicians, statisticians, computational biologists, contract research organizations and translational scientists to deliver science that supports the development of medicines to patients in need. This individual will assume translational lead responsibilities for assets such as serving as a TM representative on global program teams, biomarker representative on study teams, setting up biomarker plans for individual trials and ensuring appropriate collection and timely analysis and reporting of final biomarker data.

Brisbane, CA30+ days ago

$122,830–$148,800 Per Year

Work-life programs include paid national holidays and optional holidays, Global Shutdown days between Christmas and New Year's holiday, up to 120 hours of paid vacation, up to two (2) paid days to volunteer, sick time off, and summer hours flexibility. We are seeking an enthusiastic, creative, and versatile Scientist to join our collaborative Protein Engineering team Engineering team in Redwood City/Brisbane (CA) to discover and engineer innovative biotherapeutic candidates and drive technological innovation.

South San Francisco, CA30+ days ago

$160,000–$185,000 Per Year

Strong track record of embedding DevOps capabilities directly within R&D or scientific teams, supporting rapid iteration and experimental workflows, with demonstrated deep analytical skills applied to troubleshooting code and resolving infrastructure issues. We are seeking a Senior DevOps Engineer to join the Technology Department to serve as a key technical partner enabling cloud-based scientific computing and drug discovery efforts focused on G-protein-coupled receptors (GPCRs).

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Bioinformatics Jobs in South San Francisco, CA

Jobs

Senior Bioinformatics ScientistCEDENT

Group Lead, Assay Development - Molecular Biology & Bioinformatics (NGS)MyOme

Bioinformatics Data Scientist AnalystTap Growth ai

Bioinformatics Software EngineerAccuraGen

Bioinformatics Associate IIITap Growth ai

Bioinformatics AnalystLancesoft

Bioinformatics AnalystTap Growth ai

Senior Bioinformatics and Image Analysis EngineerTap Growth ai

Computational ScientistTap Growth ai

Principal Scientist, Computational ChemistryDeep Apple Therapeutics

Senior / Staff Scientist, Assay AutomationClear Labs

Computational Scientist: Human GeneticsCompass Consulting

Senior or Staff Scientist, Bioengineering, Technology and Application DevelopmentCountable Labs

Principal II Scientist, Applied Chemistry, Fluidic Systems, Research & Early DevelopmentRoche

Director, Clinical Biomarker, Late Stage Neurology (Translational Medicine)Bristol Myers Squibb

Scientist Protein Engineering Display TechnologiesBristol Myers Squibb

Senior DevOps Engineer – Research Cloud & Scientific Computing (AWS)(Biotech industry experience required)Septerna

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