Labcorp Holdings IncBioinformatics Scientist I - Genetics Labcorp Holdings IncBioinformatics Scientist I - GeneticsSan Diego, CA$90,000–$105,000 / yearAs a Bioinformatics Scientist, you will collaborate closely with our research scientists and data analysts, contributing to high-impact projects that involve complex data interpretation and algorithm development. Algorithm Development and Optimization: Develop, refine, and implement algorithms for data processing, including sequence alignment, variant calling, gene expression analysis, and network biology.
Exact Sciences CorpStaff Bioinformatics Scientist Exact Sciences CorpStaff Bioinformatics ScientistLa Jolla, CAWorking in a team setting, the Staff Bioinformatics Scientist will be involved in Research and Development projects serving as a technical lead and subject matter expert in exploring, researching, and testing new technologies or providing and developing ideas and concepts to improve or develop processes that add value or establish innovative methods and processes for product development towards development of diagnostic assay products. • Present results and defend scientific ideas and findings at data meetings, group meetings, project team meetings, and/or departmental meetings; critically evaluate scientific data for its merits; lead meetings and help provide directions as a subject matter expert.
Neurona Therapeutics IncBioinformatics Scientist (Discovery Biology) Neurona Therapeutics IncBioinformatics Scientist (Discovery Biology)South San Francisco, CAIn this role, you will collaborate with a small team of experimental and computational R&D scientists and play a key part in expanding our pipeline capabilities towards biomarker discovery, characterization of leading cell therapy product candidates, as well as fuel novel product development. Required Qualifications: PhD degree (or MS + 3 years of experience working in biotech or life sciences) in Bioinformatics, Computer Science, Computer Engineering, Computational Biology, Data Science, Genetics or related field.
Moonwalk Biosciences, Inc.Scientist/Engineer, Machine Learning / Bioinformatics Moonwalk Biosciences, Inc.Scientist/Engineer, Machine Learning / BioinformaticsSouth San Francisco, CA$130,000–$173,000It has raised $57 million led by Alpha Wave Ventures, and joined by other leading life sciences investors ARCH Venture Partners, Future Ventures, GV, Khosla Ventures and YK Bioventures. Moonwalk’s discovery platform has resulted in novel adipose targets from deep genetic and epigenetic associations, advanced AI prediction tools, and profiling of primary human samples.
Exact Sciences CorpBioinformatics Scientist Exact Sciences CorpBioinformatics ScientistLa Jolla, CA$84,000–$138,000 / yearPhD in bioinformatics, computational biology, computer science, mathematics, or related field; or Masters degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 4 years of experience in lieu of a PhD; or Bachelors degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 6 years of experience in lieu of PhD. Present results and defend scientific ideas and findings at data meetings, group meetings, project team meetings, and/or departmental meetings; provide technical input as needed.
Buck Institute for Research on AgingNewBioinformatics & Data Scientist or Postdoctoral Researcher- Furman lab Buck Institute for Research on AgingBioinformatics & Data Scientist or Postdoctoral Researcher- Furman labNovato, CA$80,000–$85,000 / yearGlobally recognized as a pioneer and leader in efforts to target aging - the number one risk factor for diseases including Alzheimer's disease, Parkinson's disease, cancer, macular degeneration, heart disease, and diabetes - the Buck seeks to help people live better longer. The Buck Institute for Research on Aging is seeking a full-time Bioinformatics and Data Scientist or Postdoctoral Researcher to join a collaborative research team focused on aging, multi-omics, computational biology, and translational data science.
Nkarta, Inc.Principal Scientist, Bioinformatics Nkarta, Inc.Principal Scientist, BioinformaticsSouth San Francisco, CA$180,000–$215,000 / yearA central focus of this role is to drive and execute on Nkarta's strategy for single-cell and spatial transcriptomics, leveraging scRNA-seq, spatial, and functional genomics approaches to drive translational insights, biomarker development, and clinical decision-making in early development. Nkarta is a publicly traded (Nasdaq symbol NKTX), clinical-stage biotechnology company headquartered in South San Francisco, focused on advancing the development of allogeneic, off-the-shelf natural killer (NK) cell therapies to treat autoimmune disease.
Lawrence Livermore National LaboratoryBioinformatics Scientist Lawrence Livermore National LaboratoryBioinformatics ScientistLivermore, CA$175,530–$222,564 / yearAs a member of our multidisciplinary team, you will collaborate with experts in artificial intelligence, machine learning, molecular biology, software engineering, and interface with experimentalists generating large datasets to explore opportunities to advance scientific capabilities in detection and surveillance of novel and emerging pathogens. This will include the development of new methods, tools, and algorithms for metagenomic sequence data analysis and pathogen characterization in addition to working with multiomic datasets and applying state of the art machine learning models for integrated data analysis and prediction.
Genentech IncPrincipal Bioinformatics Scientist Genentech IncPrincipal Bioinformatics ScientistPleasanton, CA$139,400–$258,800 / yearContribute bioinformatics expertise throughout the assay development lifecycle, including initial sequencing, validation, and production implementation, by developing and maintaining analytical tools and pipelines for processing diagnostic data from tumor, germline, and cell-free DNA samples. Collaborate with multidisciplinary teams of molecular and computational biologists, as well as wet lab scientists, to design, optimize, and troubleshoot advanced high-throughput sequencing assays and workflows for clinical diagnostic applications.
Nkarta IncPrincipal Scientist, Bioinformatics Nkarta IncPrincipal Scientist, BioinformaticsSouth San Francisco, CA$180,000–$215,000 / yearA central focus of this role is to drive and execute on Nkarta's strategy for single-cell and spatial transcriptomics, leveraging scRNA-seq, spatial, and functional genomics approaches to drive translational insights, biomarker development, and clinical decision-making in early development. Nkarta is a publicly traded (Nasdaq symbol NKTX), clinical-stage biotechnology company headquartered in South San Francisco, focused on advancing the development of allogeneic, off-the-shelf natural killer (NK) cell therapies to treat autoimmune disease.
Veracyte IncSr. Bioinformatics Scientist Veracyte IncSr. Bioinformatics ScientistSouth San Francisco, CAThis position requires a unique blend of expertise in bioinformatics, extensive experience in assay optimization, analytical validation, strong skills in analytical pipeline development, automation and optimization, a deep understanding of molecular biology, and a passion for transforming complex biological data into actionable insights. • Apply leading edge knowledge in bioinformatics, genomics, and assay technologies, to contribute to development of companys concepts and principles and to achieve assay development objectives in creative and effective ways.
Personalis IncSr. Bioinformatics Scientist - DNA Technology Development & Applied AI Personalis IncSr. Bioinformatics Scientist - DNA Technology Development & Applied AIFremont, CA$155,000–$190,000 / yearSummary: The Bioinformatics Senior Scientist will work with a world-class, dynamic team of bioinformatics scientists, software engineers, and laboratory scientists, developing, testing, and applying cutting-edge cell-free and solid tumor cancer genomics products. It leverages whole-genome sequencing of a patient's tumor and matched normal samples to create personalized panel of up to 1,800 somatic variants, enabling the detection of circulating tumor DNA (ctDNA) at very low levels (down to ~1-3 PPM) in blood samples.
BeOne Medicines AGSenior Scientist, Bioinformatics BeOne Medicines AGSenior Scientist, BioinformaticsSan Carlos, CA$108,800–$148,800 / yearEssential Functions of the job: Serve as the lead bioinformatics scientist of the internal drug discovery and development programs, providing comprehensive support for new target exploration and validation, Omics-related experiment design and analysis, clinical biomarker testing platform and vendor selection, and clinical biomarker analysis with interpretation. Extensive experience in analyzing high-throughput biomedical data (e.g., RNASeq, scRNAseq, WES, spatial gene expression profiling, or human genetics): including data cleaning, functional annotation, normalization, interpretation, and visualization.
MyOmeBioinformatics Scientist MyOmeBioinformatics ScientistMenlo Park, CA$120,000–$150,000 / yearWe combine clinical-grade whole genome sequencing, advanced AI methods for genome interpretation, and seamless digital tools for doctors and patients to order and access results. You will collaborate with the research and engineering teams to develop and implement analytic pipelines, computational analysis, and interpretation of biological data.
NkartaPrincipal Scientist, Bioinformatics NkartaPrincipal Scientist, BioinformaticsCaliforniaA central focus of this role is to drive and execute on Nkarta’s strategy for single-cell and spatial transcriptomics, leveraging scRNA-seq, spatial, and functional genomics approaches to drive translational insights, biomarker development, and clinical decision-making in early development. Nkarta is a publicly traded (Nasdaq symbol NKTX), clinical-stage biotechnology company headquartered in South San Francisco, focused on advancing the development of allogeneic, off-the-shelf natural killer (NK) cell therapies to treat autoimmune disease.
Buck InstituteBioinformatics & Data Scientist or Postdoctoral Researcher- Furman lab Buck InstituteBioinformatics & Data Scientist or Postdoctoral Researcher- Furman labNovato, CAFull timeGlobally recognized as a pioneer and leader in efforts to target aging — the number one risk factor for diseases including Alzheimer’s disease, Parkinson’s disease, cancer, macular degeneration, heart disease, and diabetes — the Buck seeks to help people live better longer. The Buck Institute for Research on Aging is seeking a full-time Bioinformatics and Data Scientist or Postdoctoral Researcher to join a collaborative research team focused on aging, multi-omics, computational biology, and translational data science.
Illumina, Inc.Staff Bioinformatics Scientist - BioInsight Data Illumina, Inc.Staff Bioinformatics Scientist - BioInsight DataSan Diego, CAFull timeThe strategic data programs you will deliver as part of our BioInsight business sit at the intersection of that data generation and the world's most consequential genomics research: national genome projects sequencing entire populations, biopharma programs linking genomic variation to therapeutic targets, and clinical research initiatives building the evidence base for precision medicine. Typically requires a minimum of 8 years of related experience with a Bachelor's degree; or 6 years and a Master's degree; or a PhD with 3 years of experience; or equivalent experience in solutions architecture, bioinformatics, data engineering, or a comparable technical role in genomics or life sciences.
GATC HealthBioinformatics Analyst - CA GATC HealthBioinformatics Analyst - CAIrvine, California$70,000–$85,000 / yearAs a Bioinformatics Scientist, you will innovate, develop and implement novel analysis methods for different data types from sparse to large and complex datasets to support the internal development and validation of new pharmaceutical assets and the development of end-user, customer-facing data analysis and visualization for biotech customers and stakeholders. A highly motivated scientist with broad expertise and experience in bioinformatics, computational biology, transcriptomics, proteomics and multi-omics would be an ideal fit for this position.
Vivo HealthStaffBioinformatics Scientist Vivo HealthStaffBioinformatics ScientistSF, CA$170,000–$190,000 / yearEvery team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills.
Personalis IncSr. Bioinformatics Scientist - Novel Cell Free DNA Applications Personalis IncSr. Bioinformatics Scientist - Novel Cell Free DNA ApplicationsFremont, CA$155,000–$190,000 / yearResponsibilities: • Design and develop novel cell-free technologies and products • Collaborate closely with laboratory scientists to design experiments to develop and evaluate novel applications for cell-free DNA assays • Draw on deep experience with genomics and statistics to model and improve performance of cell-free assays and features • Synthesize large datasets to develop and evaluate new biological and technological hypotheses • Partner with the clinical evidence generation team to ensure the applicability and evaluate the performance of novel assays or feature improvements • Maintain a strong working knowledge of literature covering technological developments in the cell-free DNA and liquid biopsy space • Publish results and present at conferences in exciting areas, including cell-free DNA and cancer genomics. D.) in bioinformatics, genomics, or a related field • Extensive experience with cancer genomics • Extensive experience with somatic mutational detection and filtering • Experience with cancer liquid biopsy analysis • Proficiency in the application of statistical methods to genomic applications • Proficiency with at least one common programming language (e.g., Python, R) • A track record of designing and implementing experimental approaches to confirm and elaborate upon findings from complex projects • Experience publishing and presenting scientific results.
MithrlBioinformatics Engineer, Pipelines MithrlBioinformatics Engineer, PipelinesSan Francisco, CaliforniaYou will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure downstream data harmonization, variable ID mapping, and schema alignment. Design and maintain production grade bioinformatics pipelines for a wide range of data modalities, including microarray, cell painting, WGS and WES, spatial transcriptomics, flow cytometry, ATAC-seq, and methyl-seq.
PlasmidsaurusBioinformatics Scientist PlasmidsaurusBioinformatics ScientistSan Francisco, CaliforniaWe began by revolutionizing plasmid sequencing, making it exponentially cheaper and faster, with innovative sequencing technologies and a global network of laboratories that turn samples into answers in hours, not weeks. With the launch of our new RNA-seq service, we are taking a bold step toward our vision to sequence everything, providing scientists everywhere with faster, simpler, and more affordable access to the data that powers discovery.
Artech LLCAssociate Scientist - Bioinformatics V* Artech LLCAssociate Scientist - Bioinformatics V*Foster City, CA$75–$79.92 / hourBioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. "Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.
Thermo Fisher Scientific IncScientist III, Bioinformatics Thermo Fisher Scientific IncScientist III, BioinformaticsCarlsbad, CA$95,900–$120,000 / yearDiscover Impactful Work: As a Scientist III, Bioinformatics, you will contribute to the development and maintenance of bioinformatics applications, data systems, and computational workflows that support next-generation sequencing (NGS) companion diagnostic (CDx) assay development. Work with scientists, engineers, and program teams to develop computational solutions supporting diagnostic development and document workflows to ensure reproducibility and maintainability within regulated environments.
Integrated Resources, IncAssociate Scientist - Bioinformatics V Integrated Resources, IncAssociate Scientist - Bioinformatics VFoster City, CAThis is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.
F. Hoffmann-La Roche LtdPrincipal Bioinformatics Software Engineer F. Hoffmann-La Roche LtdPrincipal Bioinformatics Software EngineerSanta Clara, CA$165,800–$308,000 / yearOur software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so researchers and clinicians can make better health decisions faster. You will be part of the team developing cutting-edge, distributed, scale-out Next-Generation Sequencing data analysis software to ensure the highest possible software quality for gene sequencing research and disease diagnostics.
Exact SciencesStaff Bioinformatics / Machine Learning Scientist Exact SciencesStaff Bioinformatics / Machine Learning ScientistLa Jolla, CaliforniaThe ideal candidate has deep experience analyzing large and complex biological datasets in an industry setting and has demonstrated successful development, validation and deployment of algorithms, statistical and machine learning models using principled and reproducible methodology. Exact Sciences is proud to offer an employee experience that includes paid time off (including days for vacation, holidays, volunteering, and personal time), paid leave for parents and caregivers, a retirement savings plan, wellness support, and health benefits including medical, prescription drug, dental, and vision coverage.
City of HopePostdoctoral Fellow - Bioinformatics, Cancer Biology and Predictive Biomarkers (Hybrid) City of HopePostdoctoral Fellow - Bioinformatics, Cancer Biology and Predictive Biomarkers (Hybrid)Duarte, CAYour qualifications should include: PhD (or equivalent) in bioinformatics, computational biology, genomics, systems biology, biomedical engineering, statistics, computer science, or a related quantitative field (completed within five years or expected within six months). We integrate longitudinal patient cohorts with single-cell and bulk multi-omics, liquid biopsy, and patient-derived models, partnering closely with clinicians at an NCI-designated Comprehensive Cancer Center.
Ansa Biotechnologies IncBioinformatics Data Scientist Ansa Biotechnologies IncBioinformatics Data ScientistEmeryville, CA$131,250–$183,750 / yearWhile the biotechnology space can feel limited in BIPOC, non-binary, and even female representation, we endeavor to make hiring decisions that will continue to grow and support our team in the direction of cultural diversity and sustainability. Proficient in using a wide range of bioinformatics tools and resources for DNA sequence analysis, including experience using statistical, machine learning, and AI methods in molecular biology and genomics.
Kenai TherapeuticsSenior Scientist, Bioinformatics Kenai TherapeuticsSenior Scientist, BioinformaticsSan Diego, CaliforniaThis role requires exceptional technical skills, a proven ability to communicate complex findings across scientific disciplines, and a desire to thrive in a small, fast-moving organization where flexibility and initiative are essential. Kenai Therapeutics is seeking a skilled and versatile computational biologist to join our highly collaborative, multidisciplinary, and dynamic team advancing next-generation allogeneic cell therapies for neurological diseases.
LanceSoft IncAssociate Scientist - Bioinformatics V LanceSoft IncAssociate Scientist - Bioinformatics VFoster City, CA$60–$80.50 / hourFull timeTitle: Bioinformatics Engineer T2T Genome Assembly (Non model Organisms) Location: Foster City, CA Contract Duration: 12 Months Pay Range: $60.00 - $80.50 USD hourly on W2 Job Description: This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.
Exact Sciences CorpSr. Bioinformatics Quality/Test Engineer Exact Sciences CorpSr. Bioinformatics Quality/Test EngineerLa Jolla, CA$131,700–$182,300 / yearExact Sciences is proud to offer an employee experience that includes paid time off (including days for vacation, holidays, volunteering, and personal time), paid leave for parents and caregivers, a retirement savings plan, wellness support, and health benefits including medical, prescription drug, dental, and vision coverage. Work closely with bioinformatics scientists and operations to identify test inputs and provide technical guidance on the development of algorithmic test strategy, testing tools, and testing methodology.
Varite, IncBioinformatics Engineer - Genome Assembly Varite, IncBioinformatics Engineer - Genome AssemblyFoster City, CA$70–$80.49 / hourSummary: Bioinformatics Engineer — T2T Genome Assembly (Non model Organisms) This is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non-model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. With 850+ global consultants, VARITE is committed to delivering excellence to its customers by leveraging its global experience and expertise in providing comprehensive scientific, engineering, technical, and non-technical staff augmentation and talent acquisition services.
Zymo Research CorporationBioinformatics Associate I Zymo Research CorporationBioinformatics Associate IIrvine, CA$75,000–$95,000Recognized as a Top Workplace by the Orange County Register in 2021, 2022, and named a Top Workplace USA in 2023, Zymo Research continues to be a vibrant community where employees thrive, feel connected, and are inspired by their work. Actual compensation details will be provided in writing at the time of offer, if applicable, and is based on several factors we believe fairly and accurately impact compensation, including geographic location, experience, knowledge, skills, abilities, and other job permitted factors.
UCSF Medical CenterBIOINFORMATICS PROGR UCSF Medical CenterBIOINFORMATICS PROGRSan Francisco, CAThe scope of work will include anayzing biological datasets generated experimentally including but not limited to bulk and single cell multiomics sequencing, epigenomics data including ChIP-Seq and CUT&RUN, and imaging data including spatial transcriptomics; overlapping experimental data with publicaly available genomic and expression datasets including UK Biobank, All of Us, Heart Cell Atlas, and similar datasets. The incumbent will work closely with prinicpal investigators within the Genetic Center to design and implement analysis pipelines in several broad areas of computational biology including analysis of experimentally generated datasets in basic research, and analysis of patient-derived genomic data from UCSF patients as well as publicly available data repositories.
Pyramid Consulting, IncBioinformatics Engineer T2T Genome Assembly (Non-Model Organisms) Pyramid Consulting, IncBioinformatics Engineer T2T Genome Assembly (Non-Model Organisms)Foster City, CA$75–$80 / hourBy applying to our jobs you agree to receive calls, AI-generated calls, text messages, or emails from Pyramid Consulting, Inc. and its affiliates, and contracted partners. Design assembly strategies for non-model organisms, including genome profiling, contamination screening, sequencing coverage assessment, and data quality evaluation.
AccuraGenBioinformatics Software Engineer AccuraGenBioinformatics Software EngineerSan Jose, CaliforniaAs a Bioinformatics Software Engineer at AccuraGen, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
10X Genomics IncScientist II, Clinical Bioinformatics 10X Genomics IncScientist II, Clinical BioinformaticsPleasanton, CAThe ideal candidate excels at distilling complex biological questions into actionable computational strategies, implementing computational/statistical methods and applying them to large-scale single-cell or spatial transcriptomics datasets to derive clinically meaningful insights. The successful candidate will have an opportunity to work with some of the largest biomedical datasets assayed using cutting-edge 10x Genomics technologies, deriving clinical insights that power the next generation of clinical diagnostics.
Genentech IncPrincipal Scientist, Bioinformatics Human Genetics Genentech IncPrincipal Scientist, Bioinformatics Human GeneticsSouth San Francisco, CA$150,700–$279,900 / yearExample focus areas you may lead include: Building a neuroscience-focused variant interpretation capability that links coding and noncoding variants to molecular function and disease-relevant phenotypes, with confidence scoring and integration into downstream genetics workflows. In this role, you will: Lead end-to-end human genetics analyses across array and sequencing cohorts, including rigorous QC, GWAS, fine-mapping, colocalization, gene prioritization, and rare-variant association (e.g., gene-based burden and variance-component approaches), with attention to multi-ancestry and bias/robustness.
Labcorp Holdings IncLead Bioinformatics Scientist - Sample to Answer Labcorp Holdings IncLead Bioinformatics Scientist - Sample to AnswerSan Diego, CA$120,000–$150,000 / yearLabcorp is a global leader in diagnostic testing and drug development solutions, helping healthcare providers, researchers, and patients make informed decisions that advance care. Job Responsibilities: The Sample‑to‑Answer Center of Excellence (CoE) within the LabCorp Information Technology department manages a wide range of diagnostic tests using advanced technologies such as next‑generation sequencing and microarrays.
Coherus Oncology IncSenior Scientist, Bioinformatics Coherus Oncology IncSenior Scientist, BioinformaticsRedwood City, CA$140,000–$175,000 / yearThe Senior Scientist will execute rigorous, reproducible analyses and collaborate closely with translational scientists and other cross-functional partners to generate biologically meaningful insights that support clinical decision-making. Education & Expereince: PhD with 1+ years of relevant industry experience, or Master's degree with 5+ years of relevant industry experience in Bioinformatics, Computational Biology, Genomics, Statistics, Cancer Biology, Immunology or a related fields.
UCSF Medical CenterBioinformatics Programmer 3 UCSF Medical CenterBioinformatics Programmer 3San Francisco, CADepartment Description: The Nephrology Division spans multiple campuses with faculty and staff located at the UCSF Health, San Francisco Veterans Affairs Medical Center, and Zuckerberg San Francisco General The Nephrology Division consists of faculty, fellows, and staff whose work is grounded in deep commitment to and respect for patients with kidney disease. The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care.
Revvity IncCustomer Support Specialist- Bioinformatics Revvity IncCustomer Support Specialist- BioinformaticsCA$70,000–$80,000 / yearYou will diagnose and resolve issues across next-generation sequencing (NGS) workflows, translate complex concepts into practical guidance, and champion customer needs with cross-functional teams. Your Superpowers in Action: Serve as the dedicated technical support contact for Newborn Screening scientists and bioinformatics users via phone, email, and on-site visits, ensuring timely, high-quality resolutions.
Stealth CoSenior Staff Engineer, Bioinformatics Stealth CoSenior Staff Engineer, BioinformaticsSan Diego, CaliforniaThe ideal candidate combines strong expertise in data science and software development, along with the ability to work cross-functionally with wet-lab and commercial teams. The SeniorStaff Engineer, Bioinformatics will develop, advance, and support large-scale analysis of multi-omic data, through application of existing and novel methods.
Rose InternationalAssociate Scientist - Bioinformatics Jobs in USA, CA, Foster City | Rose International Job Rose InternationalAssociate Scientist - Bioinformatics Jobs in USA, CA, Foster City | Rose International JobFoster City, CA$70–$80 / hourTemporaryDescriptionBioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. Workflow + compute operations experience: Nextflow/Snakemake/WDL; running large genomics workloads on on prem HPC (e.g., Slurm/LSF) and AWS (e.g., Batch/HealthOmics), with cost aware scaling.
Illumina IncSenior Bioinformatics Scientist Illumina IncSenior Bioinformatics ScientistSan Diego, CA$129,400–$194,000 / yearRequirements: Experience with signal processing, data analysis, and the application of statistical approaches Experience with C++ is preferred, but other languages (e.g., Java or C#) will also be considered (Minimum: intermediate level with understanding of object-oriented design) Ability to define the architecture, develop, and debug software applications Strong problem-solving skills Personal initiative and ability to work effectively as part of a team Superior written and verbal communication skills Be curious, detail-oriented, and analytical, with a proven ability to learn quickly. Responsibilities: Design, prototype, and implement signal processing and bioinformatics algorithms Analyze data and optimize software at the algorithm, design, and/or source code level Collaborate with external teams to ensure a smooth, end-to-end workflow with external organizations Develop, debug, and integrate optimized C/C++ software on Linux for multi-threaded applications Provide technical leadership and represent the team at project and executive levels.
Illumina, Inc.Principal Deep Learning/AI Engineer, Bioinformatics Illumina, Inc.Principal Deep Learning/AI Engineer, BioinformaticsSan Diego, CAFull timeHands-on algorithm and model development: Design, prototype, and implement AI/ML methods for genomics and multiomics (e.g., basecalling, variant calling, error modeling, QC, anomaly detection, methylation, single-cell, metagenomics, assembly, interpretation). The Principal Deep Learning/AI Engineer Bioinformatics is a senior hands-on technical expert responsible for inventing, implementing, and validating AI- and ML-driven bioinformatics methods that directly power Illumina's sequencing and analysis products.
Veracyte IncBioinformatics Research Scientist II Veracyte IncBioinformatics Research Scientist IISouth San Francisco, CARemote$122,000–$166,000 / hourOur Veracyte Diagnostics Platform delivers high-performing cancer tests that are fueled by broad genomic and clinical data, deep bioinformatic and AI capabilities, and a powerful evidence-generation engine, which ultimately drives durable reimbursement and guideline inclusion for our tests, along with new insights to support continued innovation and pipeline development. KEY RESPONSIBILITIES: Analyze gene expression, transcriptomic, and next-generation sequencing data applying state-of-the-art statistical and machine-learning methods to derive biological and clinical insights, with a primary focus on prostate cancer cohorts from clinical and research studies.
Eli Lilly and CoDirector, Discovery Bioinformatics Oncology Eli Lilly and CoDirector, Discovery Bioinformatics OncologySouth San Francisco, CA$193,500–$338,800 / yearOur current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women's Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Strong software engineering skills: Python, ML tooling (PyTorch Lightning, Hydra, Weights & Biases/MLflow), Git/GitHub, code review, testing & productionizing models with Docker/Kubernetes, APIs, and AWS services (e.g., S3, Batch/EKS, Lambda, Step Functions, SageMaker or equivalent).
MyOmeBioinformatics Software Engineer MyOmeBioinformatics Software EngineerSan Francisco, CA$130,000–$160,000 / yearWe combine clinical-grade whole genome sequencing, advanced AI methods for genome interpretation, and seamless digital tools for doctors and patients to order and access results. You will combine strong engineering practices with bioinformatics expertise to develop reliable, production-grade systems that support clinical decision-making and advance precision medicine.