NewScientist II, Field Applications Bioinformatics Support Pacific Biosciences of California IncScientist II, Field Applications Bioinformatics SupportMenlo Park, CA$112,000–$168,000 / yearPacBio (NASDAQ: PACB) is a premier life science technology company that designs, develops, and manufactures advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. If you are an individual with a disability and require a reasonable accommodation to complete any part of the application process, or are limited in the ability or unable to access or use this online application process and need an alternative method for applying, you may contact us at 650-521-8000, or careers@pacificbiosciences.com for assistance.
Bioinformatics Programmer UCSF Medical CenterBioinformatics ProgrammerSan Francisco, CAWe are seeking an individual with experience in data science, proteomics and open-source software tools and ability to write custom scripts for high throughput sequence mapping and alignment; download and upload of data and integration of data pipelines with public repositories; assisting in management of large genomics datasets as well as writing custom computational solutions when available tools are inadequate and/or if these are necessary to resolve bugs in existing software. A bright, hardworking individual with very strong communication and organizational skills is sought by the Department of Neurology, University of California at San Francisco, to serve as a staff bioinformatician providing support for ongoing research projects related to the analysis of phage immunoprecipitation, metagenomic, transcriptomic (bulk and single cell), and immune repertoire (bulk and single cell) sequencing data.
Principal Scientist, Bioinformatics Nkarta, Inc.Principal Scientist, BioinformaticsSouth San Francisco, CA$180,000–$215,000 / yearA central focus of this role is to drive and execute on Nkarta's strategy for single-cell and spatial transcriptomics, leveraging scRNA-seq, spatial, and functional genomics approaches to drive translational insights, biomarker development, and clinical decision-making in early development. Nkarta is a publicly traded (Nasdaq symbol NKTX), clinical-stage biotechnology company headquartered in South San Francisco, focused on advancing the development of allogeneic, off-the-shelf natural killer (NK) cell therapies to treat autoimmune disease.
Bioinformatics Programmer 3 UCSF Medical CenterBioinformatics Programmer 3San Francisco, CADepartment Description: The Nephrology Division spans multiple campuses with faculty and staff located at the UCSF Health, San Francisco Veterans Affairs Medical Center, and Zuckerberg San Francisco General The Nephrology Division consists of faculty, fellows, and staff whose work is grounded in deep commitment to and respect for patients with kidney disease. The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care.
BIOINFORMATICS PROGR UCSF Medical CenterBIOINFORMATICS PROGRSan Francisco, CAThe scope of work will include anayzing biological datasets generated experimentally including but not limited to bulk and single cell multiomics sequencing, epigenomics data including ChIP-Seq and CUT&RUN, and imaging data including spatial transcriptomics; overlapping experimental data with publicaly available genomic and expression datasets including UK Biobank, All of Us, Heart Cell Atlas, and similar datasets. The incumbent will work closely with prinicpal investigators within the Genetic Center to design and implement analysis pipelines in several broad areas of computational biology including analysis of experimentally generated datasets in basic research, and analysis of patient-derived genomic data from UCSF patients as well as publicly available data repositories.
Senior Scientist, Bioinformatics BeOne Medicines AGSenior Scientist, BioinformaticsSan Carlos, CA$108,800–$148,800 / yearEssential Functions of the job: Serve as the lead bioinformatics scientist of the internal drug discovery and development programs, providing comprehensive support for new target exploration and validation, Omics-related experiment design and analysis, clinical biomarker testing platform and vendor selection, and clinical biomarker analysis with interpretation. Extensive experience in analyzing high-throughput biomedical data (e.g., RNASeq, scRNAseq, WES, spatial gene expression profiling, or human genetics): including data cleaning, functional annotation, normalization, interpretation, and visualization.
Bioinformatics Software Engineer MyOmeBioinformatics Software EngineerSan Francisco, CA$130,000–$160,000 / yearWe combine clinical-grade whole genome sequencing, advanced AI methods for genome interpretation, and seamless digital tools for doctors and patients to order and access results. You will combine strong engineering practices with bioinformatics expertise to develop reliable, production-grade systems that support clinical decision-making and advance precision medicine.
Bioinformatics Engineer, Pipelines MithrlBioinformatics Engineer, PipelinesSan Francisco, CaliforniaYou will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure downstream data harmonization, variable ID mapping, and schema alignment. Design and maintain production grade bioinformatics pipelines for a wide range of data modalities, including microarray, cell painting, WGS and WES, spatial transcriptomics, flow cytometry, ATAC-seq, and methyl-seq.
Scientist/Engineer, Machine Learning / Bioinformatics Moonwalk Biosciences, Inc.Scientist/Engineer, Machine Learning / BioinformaticsSouth San Francisco, CA$130,000–$173,000It has raised $57 million led by Alpha Wave Ventures, and joined by other leading life sciences investors ARCH Venture Partners, Future Ventures, GV, Khosla Ventures and YK Bioventures. Moonwalk’s discovery platform has resulted in novel adipose targets from deep genetic and epigenetic associations, advanced AI prediction tools, and profiling of primary human samples.
Bioinformatics Scientist Vivo HealthStaffBioinformatics ScientistSF, CA$170,000–$190,000 / yearFull timeEvery team member plays a crucial role in driving the future of biotech research, building the world's most efficient sequencing engine that operates overnight and scales globally. This role is heavily bioinformatics-focused, emphasizing deep domain expertise and the building of scalable products over general software platform skills.
Sr. Manager, Bioinformatics F. Hoffmann-La Roche LtdSr. Manager, BioinformaticsSanta Clara, CA$170,500–$316,600 / yearBecause the Axelios platform operates on a completely different paradigm than traditional Sequencing-by-Synthesis (SBS), you will be instrumental in educating the market, ensuring seamless migration to our tools, and translating complex customer feedback into actionable development pipelines. You will lead an elite team of bioinformatics scientists and software engineers to create bespoke, high-impact solutions, resolve sophisticated technical roadblocks, and even engage in collaborative research with early adopters.
Principal Bioinformatics Software Engineer F. Hoffmann-La Roche LtdPrincipal Bioinformatics Software EngineerSanta Clara, CA$165,800–$308,000 / yearOur software teams are laying the groundwork for the future by developing powerful bioinformatics algorithms, data analysis tools, and software/systems infrastructures so researchers and clinicians can make better health decisions faster. You will be part of the team developing cutting-edge, distributed, scale-out Next-Generation Sequencing data analysis software to ensure the highest possible software quality for gene sequencing research and disease diagnostics.
Scientist II, Field Applications Bioinformatics Support Pacific BiosciencesScientist II, Field Applications Bioinformatics SupportMenlo Park, CaliforniaPacBio (NASDAQ: PACB) is a premier life science technology company that designs, develops, and manufactures advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. If you are an individual with a disability and require a reasonable accommodation to complete any part of the application process, or are limited in the ability or unable to access or use this online application process and need an alternative method for applying, you may contact us at 650-521-8000, or careers@pacificbiosciences.com?subject=Assistance%20With%20Application.
Bioinformatics Scientist CareTechProsBioinformatics ScientistSan Francisco, CaliforniaThis role involves designing and implementing computational methods to analyze complex biological data, supporting data-driven insights in genomics, transcriptomics, and other omics fields. The ideal candidate will have experience in bioinformatics, strong programming skills, and a passion for discovering biological insights that can drive scientific and clinical progress.
Bioinformatics Scientist Lawrence Livermore National LaboratoryBioinformatics ScientistLivermore, CA$175,530–$222,564 / yearAs a member of our multidisciplinary team, you will collaborate with experts in artificial intelligence, machine learning, molecular biology, software engineering, and interface with experimentalists generating large datasets to explore opportunities to advance scientific capabilities in detection and surveillance of novel and emerging pathogens. This will include the development of new methods, tools, and algorithms for metagenomic sequence data analysis and pathogen characterization in addition to working with multiomic datasets and applying state of the art machine learning models for integrated data analysis and prediction.
Bioinformatics Engineer, Pipelines Mithrl IncBioinformatics Engineer, PipelinesSan Francisco, CAYou will architect Nextflow and nf-core style pipelines, implement modality-specific validation and QC layers, and collaborate with the Tabular Data Team and Knowledge Curation Team to ensure downstream data harmonization, variable ID mapping, and schema alignment. Research shows that people who identify as being from underrepresented groups are more prone to experiencing imposter syndrome and doubting the strength of their candidacy, so we urge you not to exclude yourself prematurely and to submit an application if youre interested in this work.
NewBioinformatics Engineer, Therapeutics LatchBioBioinformatics Engineer, TherapeuticsSan Francisco, CaliforniaYou will contribute to our technical approach to teaching agents how to understand and handle complex therapeutics datasets, working across end-to-end data analysis workflows from practical therapeutics data to real scientific decisions. 2+ years hands-on experience with biologics discovery or development (antibody engineering, protein engineering, or cell/molecular biology-driven target validation) .
Associate Scientist - Bioinformatics V LancesoftAssociate Scientist - Bioinformatics VFoster City, CA$60–$80.50 / hourThis is a 12 month contract Bioinformatics Engineer role to deliver telomere to telomere (T2T) reference genomes for non model organisms by building and operating long read assembly and curation pipelines using PacBio HiFi and/or Oxford Nanopore, with complementary data (Hi C/Omni C, Strand seq, optical maps, short reads) as needed. You will partner with wet lab and computational teams to troubleshoot complex genomes (polyploidy, high heterozygosity, repeats) and package results for internal and external release.
Staff Scientist, Bioinformatics Thermo Fisher Scientific IncStaff Scientist, BioinformaticsSouth San Francisco, CA$129,400–$145,000 / yearWe provide our global teams with the resources needed to achieve individual career goals while helping to take science a step beyond by developing solutions for some of the world's toughest challenges, like protecting the environment, making sure our food is safe or helping find cures for cancer. Bachelor's degree in Bioinformatics, Computational Biology, Biomedical Engineering, or related biological field with 8+ years of experience in bioinformatics, with focus on NGS applications and oncology; OR Advanced Degree with 6+ years of experience.
Bioinformatics Engineer AccuScan SciencesBioinformatics EngineerSan Jose, CAAs a Bioinformatics Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.
Principal Scientist, Bioinformatics Nkarta IncPrincipal Scientist, BioinformaticsSouth San Francisco, CA$180,000–$215,000 / yearA central focus of this role is to drive and execute on Nkarta's strategy for single-cell and spatial transcriptomics, leveraging scRNA-seq, spatial, and functional genomics approaches to drive translational insights, biomarker development, and clinical decision-making in early development. Nkarta is a publicly traded (Nasdaq symbol NKTX), clinical-stage biotechnology company headquartered in South San Francisco, focused on advancing the development of allogeneic, off-the-shelf natural killer (NK) cell therapies to treat autoimmune disease.
Bioinformatics Scientist PlasmidsaurusBioinformatics ScientistSan Francisco, CaliforniaWe began by revolutionizing plasmid sequencing, making it exponentially cheaper and faster, with innovative sequencing technologies and a global network of laboratories that turn samples into answers in hours, not weeks. With the launch of our new RNA-seq service, we are taking a bold step toward our vision to sequence everything, providing scientists everywhere with faster, simpler, and more affordable access to the data that powers discovery.
Bioinformatics Engineer – T2T Genome Assembly (Non-Model Organisms) Pyramid, IncBioinformatics Engineer – T2T Genome Assembly (Non-Model Organisms)Foster City, CA$75–$80 / hourFull timeKey Responsibilities: Genome Assembly & Analysis Design assembly strategies for non-model organisms, including genome profiling, contamination screening, sequencing coverage assessment, and data quality evaluation. By applying to our jobs you agree to receive calls, AI-generated calls, text messages, or emails from Pyramid Consulting, Inc. and its affiliates, and contracted partners.
Bioinformatics Scientist (Discovery Biology) Neurona Therapeutics IncBioinformatics Scientist (Discovery Biology)South San Francisco, CAIn this role, you will collaborate with a small team of experimental and computational R&D scientists and play a key part in expanding our pipeline capabilities towards biomarker discovery, characterization of leading cell therapy product candidates, as well as fuel novel product development. Required Qualifications: PhD degree (or MS + 3 years of experience working in biotech or life sciences) in Bioinformatics, Computer Science, Computer Engineering, Computational Biology, Data Science, Genetics or related field.
Ophthalmology Bioinformatics Core Director Stanford UniversityOphthalmology Bioinformatics Core DirectorStanford, CA$132,498–$157,989 / yearThe pay offered to a selected candidate will be determined based on factors such as (but not limited to) the scope and responsibilities of the position, the qualifications of the selected candidate, departmental budget availability, internal equity, geographic location and external market pay for comparable jobs. Qualifications: DESIRED QUALIFICATIONS: Experience in the generation and analysis of genome-wide datasets, in particular related to the function of transcription factors, promoters and enhancers in a cell-type or pathological state specific manner.
Sr. Bioinformatics Scientist - DNA Technology Development & Applied AI Personalis IncSr. Bioinformatics Scientist - DNA Technology Development & Applied AIFremont, CA$155,000–$190,000 / yearSummary: The Bioinformatics Senior Scientist will work with a world-class, dynamic team of bioinformatics scientists, software engineers, and laboratory scientists, developing, testing, and applying cutting-edge cell-free and solid tumor cancer genomics products. It leverages whole-genome sequencing of a patient''s tumor and matched normal samples to create personalized panel of up to 1,800 somatic variants, enabling the detection of circulating tumor DNA (ctDNA) at very low levels (down to ~1-3 PPM) in blood samples.
Scientist II, Clinical Bioinformatics 10X Genomics IncScientist II, Clinical BioinformaticsPleasanton, CAThe ideal candidate excels at distilling complex biological questions into actionable computational strategies, implementing computational/statistical methods and applying them to large-scale single-cell or spatial transcriptomics datasets to derive clinically meaningful insights. The successful candidate will have an opportunity to work with some of the largest biomedical datasets assayed using cutting-edge 10x Genomics technologies, deriving clinical insights that power the next generation of clinical diagnostics.
Bioinformatics Research Scientist II Veracyte IncBioinformatics Research Scientist IISouth San Francisco, CARemote$122,000–$166,000 / hourOur Veracyte Diagnostics Platform delivers high-performing cancer tests that are fueled by broad genomic and clinical data, deep bioinformatic and AI capabilities, and a powerful evidence-generation engine, which ultimately drives durable reimbursement and guideline inclusion for our tests, along with new insights to support continued innovation and pipeline development. KEY RESPONSIBILITIES: Analyze gene expression, transcriptomic, and next-generation sequencing data applying state-of-the-art statistical and machine-learning methods to derive biological and clinical insights, with a primary focus on prostate cancer cohorts from clinical and research studies.
Bioinformatics Engineer - Biosurveillance LatchBioBioinformatics Engineer - BiosurveillanceSan Francisco, CaliforniaYou will contribute to our technical approach to teaching agents how to understand and handle complex infectious disease surveillance and molecular epidemiology data, working across end-to-end analysis workflows from sequencing outputs to real scientific decisions. We're seeking a BioEngineer for Biosurveillance/Infectious Disease Genomics to join our surveillance bench, working at the frontier of what artificial intelligence can achieve in biology.
Bioinformatics Engineer, Variant LatchBioBioinformatics Engineer, VariantSan Francisco, CaliforniaYou will contribute to our technical approach to teaching agents how to understand and handle complex genomic data, working across end-to-end data analysis workflows from instrument outputs to real scientific decisions. Latch is building intelligent, high performance agents for biological data analysis, empowering over 5,000 scientists across 150+ R&D labs to handle data from instrument-to-insights.
NewBioinformatics Staff Scientist Stanford Health CareBioinformatics Staff ScientistPALO ALTO, CA$52.69–$69.82 / hourClinical Genomics: • Familiarity with NGS data and best practices for germline sequencing • Expertise in bioinformatics resources and tools such as BLAST, BWA, GATK, dbGaP, NCBI, EBI, UCSC genome browser, etc • Experience using public annotation sources such as ClinGen, ClinVar, HGMD, cbGap, EVS, 1000 Genomes, gnomAD, and DGV. Knowledge of algorithmic techniques common to bioinformatics (e.g., dynamic programming and graph algorithms), machine learning and statistical analysis methods (e.g., Bayesian inference, Hidden Markov Models, Principal Component Analysis).
Principal Software Engineer Natera IncPrincipal Software EngineerSouth San Francisco, CA$219,800–$274,700 / yearDomain-Adjacent Experience: Prior work in any of the following helps you ramp faster, but is not required: scientific or bioinformatics computing, LIMS or laboratory data systems, workflow orchestration engines (Nextflow, WDL, Airflow, Argo, Temporal, Dagster, etc.), large-scale ETL or data pipeline systems, or HPC/batch-compute platforms. The team builds the cloud infrastructure, workflow platforms, and data platforms that R&D uses to do its science - including a Kubernetes-based workflow execution platform, a custom R&D LIMS system, and a set of supporting tools that routinely handle production-scale workloads.
Senior Data Scientist # 4630 Mom's MealsSenior Data Scientist # 4630Menlo Park, CAResponsibilities:** + Envision, design, and lead projects to evaluate and improve machine learning classifier performance for cancer detection + Collaborate cross-functionally with scientists, engineers, and clinicians to plan, execute, and interpret experiments + Develop high-quality, reproducible, and scalable software aligned with sound engineering principles + Apply best practices in machine learning and statistics to generate robust, interpretable, and reliable results + Analyze large-scale sequencing and genomics datasets to extract meaningful biological insights + Contribute to the development and evaluation of novel machine learning methods, including deep learning approaches + Communicate findings and present updates regularly in technical and cross-functional forums + Contribute to scientific publications, internal tools, and production systems _These responsibilities summarize the role’s primary responsibilities and are not an exhaustive list. We have built a multi-disciplinary organization of scientists, engineers, and physicians and we are using the power of next-generation sequencing (NGS), population-scale clinical studies, and state-of-the-art computer science and data science to overcome one of medicine’s greatest challenges.
Executive Director Translational Sciences Acadia Pharmaceuticals IncExecutive Director Translational SciencesSan Francisco, CA$269,400–$336,800 / yearKey Skills: Strong cross-functional leadership with a proven ability to build collaborative, high-performing teams and represent nonclinical sciences across Translational Sciences and program teams. The position requires deep experience in translational sciences, proven leadership and mentoring skills, hands-on rare disease experience, strong understanding of clinical biomarker development, and a deep understanding of drug development from discovery through late-stage clinical studies.